| City | Region |
|---|
| ›Madita | Sumba› |
| ›Madiun | Jawa› |
| ›Magelang | Jawa› |
| ›Maileppet | Sumatra (Kepulauan Mentawai)› |
| ›Majene | Sulawesi› |
| ›Makassar | Sulawesi› |
| ›Malamala | Sulawesi› |
| ›Malang | Jawa› |
| ›Malehu | Sulawesi› |
| ›Maliku | Central Kalimantan› |
| ›Malingping | Jawa› |
| ›Mambi | Sulawesi› |
| ›Mamuju | Sulawesi› |
| ›Manado | Sulawesi› |
| ›Mandah | Sumatra (Kepulauan Riau)› |
| ›Mandau | Sumatra› |
| ›Manokwari | Irian Jaya› |
| ›Mansaleang | Sulawesi (Kepulauani Banggai)› |
| ›Mantarara | Moluccas (Kepulauan Sula)› |
| ›Mantup | Jawa› |
| ›Mapi | Irian Jaya› |
| ›Martapura | Sumatra› |
| ›Masapun | Moluccas (Kepulauan Barat Daya› |
| ›Masin | Irian Jaya› |
| ›Masohi | Moluccas (Ceram Island)› |
| ›Mataram | Nusa Tenggara Barat (Lombok Is› |
| ›Maumere | Nusa Tenggara Timur› |
| ›Mayu Island | Moluccas› |
| ›Medan | Sumatra› |
| ›Mega | Irian Jaya› |
| ›Memboro | Sumba› |
| ›Membulu (Mebulu) | Sulawesi› |
| ›Mendawai | Central Kalimantan› |
| ›Mendoyo | Bali› |
| ›Mentok | Sumatra› |
| ›Merauke | Irian Jaya› |
| ›Merlung | Sumatra› |
| ›Metro | Sumatra› |
| ›Meulaboh | Sumatra› |
| ›Modan | Irian Jaya› |
| ›Modowi | Irian Jaya› |
| ›Mogoi | Irian Jaya› |
| ›Mokmer | Irian Jaya› |
| ›Molawe | Sulawesi› |
| ›Monse | Sulawesi› |
| ›Muarabungo | Sumatra› |
| ›Muaradua | Sumatra› |
| ›Muaralesan | East Kalimantan› |
| ›Muaratebo | Sumatra› |
| ›Mubrani | Irian Jaya› |
| ›Mukomuko | Sumatra› |
| ›Mun | Moluccas (Kepulauan Kai)› |
| ›Muncar | Jawa› |
| ›Muting | Irian Jaya› |
